make_grid: make grid for enrichment scan.

Description Usage Arguments Value

Description

make grid for enrichment scan.

Usage

1
2
make_grid(bed, fraglen, rlen, min_bin = 10, min_rds = 0, grid_st = NA,
  grid_ed = NA)

Arguments

fraglen

Integer indicating the average DNA fragment length in bp

rlen

Integer indicating the read length in bp

path

Path to alignement files.

chr

Integer specifying which chromosme to limit analysis to.

min_win

Integer indicating the minimum window size to be used in constructing grid

max_win

Integer indicating the maximum window size to be used in constructing grid

blocksize

Integer indicating how large of a chunk of the chromosome will be analyzed at a time

Value

grid.


jnkoberstein/DEScan documentation built on May 29, 2019, 11:39 a.m.