distanceMethodList: List of distance method keys supported in 'distance'
In joey711/phyloseq: Handling and analysis of high-throughput microbiome census data
distanceMethodList R Documentation
List of distance method keys supported in distance
Description
Distance methods should be specified by exact string match.
Cannot do partial matching for all options,
because too many similar options in downstream method dispatch.
Usage
distanceMethodList
Format
A list of character vectors.
Every entry specifies a supported distance method.
Names in the list indicate which downstream function
is being utilized for further details.
Same functions are linked in the itemized list below.
unifracUniFrac
wunifracUniFrac
dpcoaDPCoA
jsdJSD
manhattanvegdist
euclideanvegdist
canberravegdist
brayvegdist
kulczynskivegdist
jaccardvegdist
gowervegdist
altGowervegdist
morisitavegdist
hornvegdist
mountfordvegdist
raupvegdist
binomialvegdist
chaovegdist
caovegdist
wbetadiver
-betadiver
cbetadiver
wbbetadiver
rbetadiver
Ibetadiver
ebetadiver
tbetadiver
mebetadiver
jbetadiver
sorbetadiver
mbetadiver
-betadiver
cobetadiver
ccbetadiver
gbetadiver
-betadiver
lbetadiver
hkbetadiver
rlbbetadiver
simbetadiver
glbetadiver
zbetadiver
maximumdist
binarydist
minkowskidist
ANYdesigndist
See Also
distance
Examples
distanceMethodList
joey711/phyloseq documentation built on Nov. 4, 2022, 1:16 a.m.
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| distanceMethodList | R Documentation |
List of distance method keys supported in distance
Description
Distance methods should be specified by exact string match. Cannot do partial matching for all options, because too many similar options in downstream method dispatch.
Usage
distanceMethodList
Format
A list of character vectors. Every entry specifies a supported distance method. Names in the list indicate which downstream function is being utilized for further details. Same functions are linked in the itemized list below.
unifracUniFracwunifracUniFracdpcoaDPCoAjsdJSDmanhattanvegdisteuclideanvegdistcanberravegdistbrayvegdistkulczynskivegdistjaccardvegdistgowervegdistaltGowervegdistmorisitavegdisthornvegdistmountfordvegdistraupvegdistbinomialvegdistchaovegdistcaovegdistwbetadiver-betadivercbetadiverwbbetadiverrbetadiverIbetadiverebetadivertbetadivermebetadiverjbetadiversorbetadivermbetadiver-betadivercobetadiverccbetadivergbetadiver-betadiverlbetadiverhkbetadiverrlbbetadiversimbetadiverglbetadiverzbetadivermaximumdistbinarydistminkowskidistANYdesigndist
See Also
distance
Examples
distanceMethodList
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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