Man pages for johannabertl/SelectionMix
Negative binomial mixture model
| class_probabilities | Posterior class probabilities for a gene |
| dnegbin | The negative binomial distribution |
| EM | EM algorithm for the negative binomial mixture model |
| EM_proportions | EM algorithm for the negative binomial mixture model |
| EM_random | Wrapper function with random starting values for the EM... |
| EM_smartstart | EM algorithm for the negative binomial mixture model with... |
| loglikelihood | The (incomplete data) loglikelihood function for the negative... |
| loglikelihood_proportions | The (incomplete data) loglikelihood function for the... |
| Q | The function Q for the EM algorithm for the negative binomial... |
| Q_proportions | The function Q for the EM algorithm to estimate the... |
| rnegbinmix | The negative binomial mixture distribution with k components |
| rnegbinmix_syn_nonsyn | Simulating synonymous and non-synonymous mutation counts |
