som_to_df: Converts the Wide/Verbose Output Simulation Functions into...

In john-harrold/ubiquity: PKPD, PBPK, and Systems Pharmacology Modeling Tools

Converts the Wide/Verbose Output Simulation Functions into Data Frames

Description

The functions run_simulation_ubiquity, simulate_subjects, or run_simulation_titrate provide outputs in a more structured format, but it may be useful to convert this "wide" format to a tall/skinny format.

Usage

som_to_df(cfg, som)

Arguments

cfg	ubiquity system object
som	simulation output from run_simulation_ubiquity, simulate_subjects, or run_simulation_titrate

Value

Data frame of the format:

When applied to the output of run_simulation_ubiquity or run_simulation_titrate

• ts.time - timescale of the system

• ts.ts1, ... ts.tsn - timescales defined in the system (<TS>)

• pred - predicted/simulated response

• tt.ti1.x - titration event information (*)

• name - state or output (<O>) name corresponding to the prediction

When applied to the output of simulate_subjects

• ID - subject ID

• ts.time - timescale of the system

• ts.ts1, ... ts.tsn - timescales defined in the system (<TS>)

• pred - predicted/simulated response

• tt.ti1.x - titration event information (*)

• P1, P2, ... Pn - system parameters for the subject (<P>)

• name - state or output (<O>) name corresponding to the prediction

(* - field present when titration is enabled)

See Also

run_simulation_titrate internally when running simulations.

john-harrold/ubiquity documentation built on March 13, 2024, 2:58 a.m.