gene.list: Differential gene list and background gene list

In jokergoo/CePa: Centrality-Based Pathway Enrichment

Description

Differential gene list and background gene list

Usage

data(gene.list)

Details

Differential gene list and background gene list was extracted from microarray data from GEO database. The accession number for the data set is GSE22058. The t-test was applied to find differentially expressed genes. Top 2000 genes were selected as the gene list.

Value

A list containing two componets:

bk

background gene list, gene symbol

dif

differentially expressed gene list, gene symbol

Source

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22058

Examples

data(gene.list)
names(gene.list)

jokergoo/CePa documentation built on July 2, 2021, 10:28 p.m.