anno_horizon: Horizon chart Annotation

In jokergoo/ComplexHeatmap: Make Complex Heatmaps

Horizon chart Annotation

Description

Horizon chart Annotation

Usage

anno_horizon(x, which = c("column", "row"),
    gp = gpar(pos_fill = "#D73027", neg_fill = "#313695"),
    n_slice = 4, slice_size = NULL, negative_from_top = FALSE,
    normalize = TRUE, gap = unit(0, "mm"),
    axis = TRUE, axis_param = default_axis_param(which),
    width = NULL, height = NULL)

Arguments

x	A matrix or a list. If x is a matrix or a data frame, columns correspond to observations.
which	Whether it is a column annotation or a row annotation?
gp	Graphic parameters for the boxes. The length of the graphic parameters should be one or the number of observations. There are two unstandard parameters specificly for horizon chart: pos_fill and neg_fill controls the filled color for positive values and negative values.
n_slice	Number of slices on y-axis.
slice_size	Height of the slice. If the value is not NULL, n_slice will be recalculated.
negative_from_top	Whether the areas for negative values start from the top or the bottom of the plotting region?
normalize	Whether normalize x by max(abs(x)).
gap	Gap size of neighbouring horizon chart.
axis	Whether to add axis?
axis_param	parameters for controlling axis. See default_axis_param for all possible settings and default parameters.
width	Width of the annotation. The value should be an absolute unit. Width is not allowed to be set for column annotation.
height	Height of the annotation. The value should be an absolute unit. Height is not allowed to be set for row annotation.

Details

Horizon chart as row annotation is only supported.

Value

An annotation function which can be used in HeatmapAnnotation.

See Also

https://jokergoo.github.io/ComplexHeatmap-reference/book/heatmap-annotations.html#horizon-chart-annotation

Examples

lt = lapply(1:20, function(x) cumprod(1 + runif(1000, -x/100, x/100)) - 1)
anno = anno_horizon(lt, which = "row")
draw(anno, test = "horizon chart")
anno = anno_horizon(lt, which = "row", 
    gp = gpar(pos_fill = "orange", neg_fill = "darkgreen"))
draw(anno, test = "horizon chart, col")
anno = anno_horizon(lt, which = "row", negative_from_top = TRUE)
draw(anno, test = "horizon chart + negative_from_top")
anno = anno_horizon(lt, which = "row", gap = unit(1, "mm"))
draw(anno, test = "horizon chart + gap")
anno = anno_horizon(lt, which = "row", 
    gp = gpar(pos_fill = rep(c("orange", "red"), each = 10),
    neg_fill = rep(c("darkgreen", "blue"), each = 10)))
draw(anno, test = "horizon chart, col")

jokergoo/ComplexHeatmap documentation built on Sept. 24, 2024, 4:48 p.m.