interactivate.DESeqDataSet: Visualize DESeq2 result in an interactive Shiny app

In jokergoo/InteractiveComplexHeatmap: Make Interactive Complex Heatmaps

Visualize DESeq2 result in an interactive Shiny app

Description

Visualize DESeq2 result in an interactive Shiny app

Usage

## S3 method for class 'DESeqDataSet'
interactivate(x, res = DESeq2::results(x), seed = 123, ...)

Arguments

x	A DESeqDataSet class object. It is normally returned by DESeq.
res	The object returned by results.
seed	Random seed. It is mainly set for the random colors of annotations.
...	Other arguments.

Examples

if(interactive()) {
    require(airway)
    data(airway)
    se = airway

    require(DESeq2)
    dds = DESeqDataSet(se, design = ~ dex)
    keep = rowSums(counts(dds)) >= 10
    dds = dds[keep, ]
    dds$dex = relevel(dds$dex, ref = "untrt")
    dds = DESeq(dds)

    interactivate(dds)
}

jokergoo/InteractiveComplexHeatmap documentation built on Feb. 28, 2024, 7:34 p.m.