dependency: Job dependencies

In jokergoo/bsub: Submitter and Monitor of the 'LSF Cluster'

Job dependencies

Description

Job dependencies

Usage

job_dependency_all(job_tb = NULL)

job_dependency_igraph(job_id, job_tb = NULL)

job_dependency_dot(job_id, job_tb = NULL, use_label = FALSE, label_width = 15)

job_dependency_diagram(
  job_id,
  job_tb = NULL,
  use_label = FALSE,
  label_width = 15,
  ...
)

Arguments

job_tb	A data frame from bjobs(). Internally used.
job_id	A single job ID.
use_label	Whether to use job names on the diagram?
label_width	Max number of characters for wrapping the label into lines.
...	Pass to DiagrammeR::grViz(), such as the size of the html widget.

Value

job_dependency_all() returns a list that contains three elements:

• dep_mat: a two column matrix containing dependencies from parents to children.

• id2name: a named vector containing mapping from job IDs to job names.

• id2stat: a named vector containing mapping from job IDs to job status.

job_dependency_igraph() returns a igraph::igraph object which contains a dependency graph induced by the input job ID.

job_dependency_dot() returns a DOT code for GraphViz visualization.

job_dependency_diagram() makes a HTML-based dependency diagram.

Examples

## Not run: 
job1 = random_job()
job2 = random_job()
job3 = random_job(dependency = c(job1, job2))

job_dependency_all()
job_dependency_igraph(job3)
cat(job_dependency_dot(job3))
job_dependency_diagram(job3)

## End(Not run)

jokergoo/bsub documentation built on June 30, 2024, 5:16 p.m.