Man pages for jokergoo/simplifyGO
Simplify Functional Enrichment Results
| anno_word_cloud | Word cloud annotations |
| anno_word_cloud_from_GO | Word cloud annotations from GO |
| area_above_ecdf | Area above the eCDF curve |
| binary_cut | Cluster functional terms by recursively binary cutting the... |
| cluster_methods | Configure clustering methods |
| cluster_terms | Cluster terms based on their similarity matrix |
| compare | Compare clustering methods |
| count_words | Calculate word frequency |
| dend | Apply functions on every node in a dendrogram |
| difference_score | Difference score |
| export_to_shiny_app | Interactively visualize the similarity heatmap |
| GO_similarity | Calculate Gene Ontology (GO) semantic similarity matrix |
| ht_clusters | Visualize the similarity matrix and the clustering |
| keyword_enrichment_from_GO | Keyword enrichment for GO terms |
| node_partition | Partition the matrix |
| scale_fontsize | Scale font size |
| select_cutoff | Select the cutoff for binary cut |
| se_opt | Global parameters |
| simplifyGO | Simplify Gene Ontology (GO) enrichment results |
| simplifyGOFromMultipleLists | Perform simplifyGO analysis with multiple lists of GO IDs |
| summarizeGO | A simplified way to visualize enrichment in GO clusters |
| word_cloud_grob | A simple grob for the word cloud |
