difference_score: Difference score
In jokergoo/simplifyGO: Simplify Functional Enrichment Results
difference_score R Documentation
Difference score
Description
Difference score
Usage
difference_score(mat, cl)
Arguments
mat
The similarity matrix.
cl
Cluster labels.
Details
This function measures the different between the similarity values for the terms
that belong to the same clusters and in different clusters. The difference score
is the Kolmogorov-Smirnov statistic between the two distributions.
Value
A numeric scalar.
Examples
mat = readRDS(system.file("extdata", "random_GO_BP_sim_mat.rds",
package = "simplifyEnrichment"))
cl = binary_cut(mat)
difference_score(mat, cl)
jokergoo/simplifyGO documentation built on Sept. 18, 2024, 9:45 p.m.
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| difference_score | R Documentation |
Difference score
Description
Difference score
Usage
difference_score(mat, cl)
Arguments
mat |
The similarity matrix. |
cl |
Cluster labels. |
Details
This function measures the different between the similarity values for the terms that belong to the same clusters and in different clusters. The difference score is the Kolmogorov-Smirnov statistic between the two distributions.
Value
A numeric scalar.
Examples
mat = readRDS(system.file("extdata", "random_GO_BP_sim_mat.rds",
package = "simplifyEnrichment"))
cl = binary_cut(mat)
difference_score(mat, cl)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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