API for jokergoo/simplifyGO
Simplify Functional Enrichment Results
| Global functions | |
|---|---|
| .cluster_mat | Source code |
| .onAttach | Source code |
| DO_similarity | Man page Source code |
| GO_similarity | Man page Source code |
| all_clustering_methods | Man page Source code |
| anno_word_cloud | Man page Source code |
| anno_word_cloud_from_GO | Man page Source code |
| area_above_ecdf | Man page Source code |
| assign_score2 | Source code |
| binary_cut | Man page Source code |
| block_mean | Source code |
| calc_similarity | Source code |
| check_pkg | Source code |
| cluster_by_MCL | Man page Source code |
| cluster_by_apcluster | Man page Source code |
| cluster_by_dynamicTreeCut | Man page Source code |
| cluster_by_hdbscan | Man page Source code |
| cluster_by_igraph | Man page Source code |
| cluster_by_kmeans | Man page Source code |
| cluster_by_mclust | Man page Source code |
| cluster_by_pam | Man page Source code |
| cluster_mat | Source code |
| cluster_mat2 | Source code |
| cluster_terms | Man page Source code |
| cmp_calc_concordance | Source code |
| cmp_calc_stats | Source code |
| cmp_make_clusters | Man page Source code |
| cmp_make_plot | Man page Source code |
| compare_clustering_methods | Man page Source code |
| count_words | Man page Source code |
| cut_dend | Source code |
| dend_max_depth | Source code |
| dend_node_apply | Man page Source code |
| difference_score | Man page Source code |
| edit_node | Man page Source code |
| elbow_finder | Source code |
| export_to_shiny_app | Man page Source code |
| gene_weight | Source code |
| generate_size_fun | Source code |
| get_clustering_method | Source code |
| get_gene_desc_from_GO | Source code |
| get_gene_desc_from_KEGG | Source code |
| get_gene_desc_from_Reactome | Source code |
| guess_ont | Man page Source code |
| heightDetails.word_cloud | Man page Source code |
| ht_clusters | Man page Source code |
| is_GO_id | Source code |
| is_p_value | Source code |
| kappa | Source code |
| kappa_dist | Source code |
| keyword_enrichment | Source code |
| keyword_enrichment_from_GO | Man page Source code |
| knee_finder | Source code |
| make_term_document_matrix | Source code |
| other_mean | Source code |
| overlap_dist | Source code |
| overlap_single | Source code |
| partition_by_hclust | Man page Source code |
| partition_by_kmeans | Man page Source code |
| partition_by_kmeanspp | Man page Source code |
| partition_by_pam | Man page Source code |
| plot_binary_cut | Man page Source code |
| prepare_keywords_tdm_for_GO | Source code |
| random_DO | Man page Source code |
| random_GO | Man page Source code |
| register_clustering_methods | Man page Source code |
| remove_clustering_methods | Man page Source code |
| render_dend | Source code |
| reset_clustering_methods | Man page Source code |
| scale_fontsize | Man page Source code |
| se_opt | Man page Source code |
| select_cutoff | Man page Source code |
| simplifyEnrichment | Man page Source code |
| simplifyGO | Man page Source code |
| simplifyGOFromMultipleLists | Man page Source code |
| split_by_block | Source code |
| subset_enrichResult | Man page Source code |
| summarizeGO | Man page Source code |
| term_similarity | Man page Source code |
| term_similarity_from_KEGG | Man page Source code |
| term_similarity_from_MSigDB | Man page Source code |
| term_similarity_from_Reactome | Man page Source code |
| term_similarity_from_enrichResult | Man page Source code |
| term_similarity_from_gmt | Man page Source code |
| test_padj_column | Source code |
| widthDetails.word_cloud | Man page Source code |
| word_cloud_grob | Man page Source code |
