cluster_by_pam: Cluster similarity matrix by pam clustering
In jokergoo/simplifyGO: Simplify Functional Enrichment Results
cluster_by_pam R Documentation
Cluster similarity matrix by pam clustering
Description
Cluster similarity matrix by pam clustering
Usage
cluster_by_pam(mat, max_k = max(2, min(round(nrow(mat)/10), 100)), ...)
Arguments
mat
The similarity matrix.
max_k
maximal k for pam clustering.
...
Other arguments passed to pamk.
Details
PAM is applied by pamk which can automatically select the best k.
Value
A vector of cluster labels (in numeric).
Examples
# There is no example
NULL
jokergoo/simplifyGO documentation built on Oct. 25, 2023, 9:02 p.m.
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| cluster_by_pam | R Documentation |
Cluster similarity matrix by pam clustering
Description
Cluster similarity matrix by pam clustering
Usage
cluster_by_pam(mat, max_k = max(2, min(round(nrow(mat)/10), 100)), ...)
Arguments
mat |
The similarity matrix. |
max_k |
maximal k for pam clustering. |
... |
Other arguments passed to |
Details
PAM is applied by pamk which can automatically select the best k.
Value
A vector of cluster labels (in numeric).
Examples
# There is no example
NULL
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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