DO_similarity: Calculate Disease Ontology (DO) semantic similarity matrix
In jokergoo/simplifyGO: Simplify Functional Enrichment Results
View source: R/similarity_DO.R
DO_similarity R Documentation
Calculate Disease Ontology (DO) semantic similarity matrix
Description
Calculate Disease Ontology (DO) semantic similarity matrix
Usage
DO_similarity(do_id, measure = "Rel", remove_orphan_terms = FALSE)
Arguments
do_id
A vector of DO IDs.
measure
Semantic measure for the DO similarity, pass to doSim.
remove_orphan_terms
Whether to remove terms that have zero similarity to all other terms?
Details
This function is basically a wrapper on doSim.
Value
A symmetric matrix.
Examples
require(DOSE)
do_id = random_DO(10)
DO_similarity(do_id)
jokergoo/simplifyGO documentation built on Oct. 25, 2023, 9:02 p.m.
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View source: R/similarity_DO.R
| DO_similarity | R Documentation |
Calculate Disease Ontology (DO) semantic similarity matrix
Description
Calculate Disease Ontology (DO) semantic similarity matrix
Usage
DO_similarity(do_id, measure = "Rel", remove_orphan_terms = FALSE)
Arguments
do_id |
A vector of DO IDs. |
measure |
Semantic measure for the DO similarity, pass to |
remove_orphan_terms |
Whether to remove terms that have zero similarity to all other terms? |
Details
This function is basically a wrapper on doSim.
Value
A symmetric matrix.
Examples
require(DOSE)
do_id = random_DO(10)
DO_similarity(do_id)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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