simplifyEnrichment: Simplify functional enrichment results

View source: R/simplify.R

simplifyEnrichmentR Documentation

Simplify functional enrichment results

Description

Simplify functional enrichment results

Usage

simplifyEnrichment(mat, method = "binary_cut", control = list(),
    plot = TRUE, verbose = TRUE,
    column_title = qq("@{nrow(mat)} terms clustered by '@{method}'"),
    ht_list = NULL, ...)

Arguments

mat

A similarity matrix.

method

Method for clustering the matrix. See cluster_terms.

control

A list of parameters for controlling the clustering method, passed to cluster_terms.

plot

Whether to make the heatmap.

column_title

Column title for the heatmap.

verbose

Whether to print messages.

ht_list

A list of additional heatmaps added to the left of the similarity heatmap.

...

Arguments passed to ht_clusters.

Details

The usage is the same as simplifyGO.

Examples

# There is no example
NULL


jokergoo/simplifyGO documentation built on Oct. 25, 2023, 9:02 p.m.