tests/testthat/test-entropy_k_age.R

In jonesor/Rage: Life History Metrics from Matrix Population Models

test_that("entropy_k_age works correctly with Leslie matrices", {
  data(leslie_mpm1)
  testMatrix <- leslie_mpm1$matU

  x <- entropy_k_age(testMatrix)
  expect_true(inherits(x, "numeric"))
  expect_length(x, 1L)
  expect_gte(x, 0)

  # Does function return NA when the matrix contains an NA?
  testMatrix_NA <- testMatrix
  testMatrix_NA[1, 1] <- NA
  x <- entropy_k_age(testMatrix_NA)

  expect_true(is.na(x))
})

test_that("entropy_k_age warns and fails gracefully with Leslie matrices", {
  data(leslie_mpm1)
  testMatrix <- leslie_mpm1$matU


  # Matrix not square
  testMatrix_ns <- testMatrix[-1]
  expect_error(entropy_k_age(testMatrix_ns))

  # Matrix not numeric
  testMatrix_char <- apply(testMatrix, c(1, 2), as.character)
  expect_error(entropy_k_age(testMatrix_char))
})