featureVarPlot: Variance Plot

In jordirofes/OmniOmics: Analysis of metabolomics (LC-MS) and transcriptomics (Microarray) data

Variance Plot

Description

Creates a scatter plot with the ordered feature values after evaluating the given function for each feature usually used to visualize the distribution of IQR, standard deviation or coefficient of variation (CV) for each feature.

Usage

featureVarPlot(features, varfun, interactive = TRUE)

Arguments

features	A SummarizedExperiment or ExpressionSet
varfun	A function to calculate for each feature, usually IQR / SD or function(x)sd(x)/mean(x)
interactive	A boolean indicating if the plot will be converted to an interactive 'ggplotly()'

Value

Returns a ggplot object or a ggplotly

Author(s)

Jordi Rofes Herrera

jordirofes/OmniOmics documentation built on Nov. 22, 2022, 5:46 a.m.