procTranscript: Processing function for illumina and affymetrix microarrays...

In jordirofes/OmniOmics: Analysis of metabolomics (LC-MS) and transcriptomics (Microarray) data

Processing function for illumina and affymetrix microarrays illumina expression normalization and RMA for affymetrix.

Description

Normalizes a GeneFeatureSet using the RMA method or an ExpressionSetIllumina using the selected methodology

Usage

procTranscript(object, method, annotationTable)

Arguments

object	A microarray data in a ExpressionSet or GeneFeatureSet
method	String specifying the illumina normalization method methods are: "quantile", "qspline", "vsn", "rankInvariant", "median" and "none".

Value

Returns a processed ExpressionSetIllumina for illumina data or an ExpressionSet

Author(s)

Jordi Rofes Herrera

jordirofes/OmniOmics documentation built on Nov. 22, 2022, 5:46 a.m.