find_threshold: Find threshold for reconstruction error

In joseah/HierscPred: Supervised hierarchical classification for scPred

Description

Determines threshold for reconstruction errors computed from multiple resamples

Usage

find_threshold(
  object,
  labels,
  nfolds = 5,
  fn_perc = 0.01,
  seed = 66,
  scaledata = FALSE,
  verbose = FALSE
)

Arguments

object	Seurat object used as reference
labels	Response variable
nfolds	Number of resamples
fn_perc	TBD
seed	Numeric seed to create resamples
verbose	Display Seurat messages?

Value

A numeric value corresponding to the threshold for reconstruction error

Author(s)

Lieke Michielsen and Jose Alquicira-Hernandez

Examples

library(scPred)
data(pbmc_1)
res <- find_threshold(pbmc_1, pbmc_1$cell_type)

joseah/HierscPred documentation built on Nov. 25, 2021, 12:20 p.m.