differentiate: Performs statistical test to determine the differentiation...

In joseflaviojr/transmod: Transcriptogram and Modularity

Description

Performs statistical test to determine the differentiation level between two sets of gene expression samples. Performs univariate (rowwise) Welch tests.

Usage

differentiate(expressions, control_group, target_group)

Arguments

expressions	Gene expression matrix: row = gene, column = sample and element = expression level.
control_group	Column indexes (samples) that are part of the differentiation control group.
target_group	Column indexes (samples) that are part of the differentiation target group.

Value

List of gene differentiation levels, in the order of the lines of the input matrix.

See Also

See example of use in the site https://github.com/joseflaviojr/transmod

joseflaviojr/transmod documentation built on May 9, 2019, 8:34 a.m.