transcriptogram: Normalizes gene expression profiles to transcriptogram...
In joseflaviojr/transmod: Transcriptogram and Modularity
Description
Usage
Arguments
Value
See Also
Description
Normalizes gene expression profiles to transcriptogram curves.
The rows of the matrix (genes) must be in the correct order (seriation).
Usage
1
transcriptogram(expressions, window = 251)
Arguments
expressions
Seriated gene expressions: row = gene, column = sample and element = expression level.
window
Window size for calculating the mean of adjacent expression.
Value
Transcriptograms matrix.
See Also
See example of use in the site https://github.com/joseflaviojr/transmod
Other transcriptogram: transcriptogram_series
joseflaviojr/transmod documentation built on May 9, 2019, 8:34 a.m.
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Description Usage Arguments Value See Also
Description
Normalizes gene expression profiles to transcriptogram curves. The rows of the matrix (genes) must be in the correct order (seriation).
Usage
1 | transcriptogram(expressions, window = 251)
|
Arguments
expressions |
Seriated gene expressions: row = gene, column = sample and element = expression level. |
window |
Window size for calculating the mean of adjacent expression. |
Value
Transcriptograms matrix.
See Also
See example of use in the site https://github.com/joseflaviojr/transmod
Other transcriptogram: transcriptogram_series
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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