AddModuleScoreScaled: AddModuleScore from Seurat using scaled expression values

In joshpeters/westerlund: A toolkit for single-cell data

Description

See ?Seurat::AddModuleScore

Usage

AddModuleScoreScaled(
  object,
  features,
  pool = NULL,
  nbin = 20,
  ctrl = 100,
  k = FALSE,
  assay = NULL,
  name = "Cluster",
  seed = 1,
  search = FALSE,
  ...
)

Arguments

object	Seurat object
features	Genes to use
pool	Genes to pull from for controls
nbin	Number of bins
ctrl	Number of control genes
k	Feature clusters
assay	Assay to use
name	Prefix for metadata columns
seed	Seed
search	Search for gene names
...

Value

Seurat object

joshpeters/westerlund documentation built on Sept. 9, 2021, 2:11 p.m.