PrepareGraph: Create igraph-compatible graph and save in Seurat object
In joshpeters/westerlund: A toolkit for single-cell data

Create igraph-compatible graph and save in Seurat object

1	PrepareGraph(object, reduction, dims, knn)

`object`	Seurat object
`reduction`	Reduced dimension slot to pull from
`dims`	Dimensions to use
`knn`	Number of k-nearest neighbors to use

Seurat object with igraph graph stored in object@misc$westerlund_graph

joshpeters/westerlund documentation built on Sept. 9, 2021, 2:11 p.m.

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