API for joshsbloom/swabseqr
Analysis Pipeline for Swabseq Covid Testing

Global functions
%>% Man page
BaseSpaceDownload Source code
addIdentifiers Man page Source code
autoRun Man page Source code
bcl2fastqRuns Man page Source code
buildCountTables Source code
buildEnvironment Man page Source code
buildResultsList Source code
countAmplicons Source code
demuxRuns Man page Source code
downloadRuns Man page Source code
errorCorrectIdxAndCountAmplicons Source code
findFlowCellFile Source code
generateExpectedIndices Source code
getAmpMatchStats Source code
getBaseSpaceRuns Source code
getFlowCellIds Source code
getKeyFiles Source code
getLooKeys Source code
getOrders Source code
getPrevResults Source code
getRunTableStatus Man page Source code
getSeqStartTimes Source code
getsavRStats Source code
initAmpliconCountTables Source code
initializeRuns Source code
lookUpKeys Man page Source code
makeWideResultTable Source code
make_hamming1_sequences Source code
parseKeyAndMerge Source code
read_yaml_cfg Source code
setAnalysisVariables Man page Source code
syncReports Man page Source code
syncRuns Man page Source code
write_yaml_cfg Source code
joshsbloom/swabseqr documentation built on Feb. 11, 2022, 5:14 p.m.