Files in joshsbloom/swabseqr
Analysis Pipeline for Swabseq Covid Testing

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

R/autoPullSeq.R R/buildEnvironment.R R/countAmplicons.R R/generateReports.R R/makeCSVReports.R R/utils-pipe.R README.md examples/auto.R examples/main.R examples/mainCHS.R

inst/keys/SampleSheet.csv

inst/keys/rpp30_f.csv

inst/keys/rpp30_r.csv

inst/keys/s2_f.csv

inst/keys/s2_r.csv

inst/rmd/qc_report.Rmd man/addIdentifiers.Rd man/autoRun.Rd man/bcl2fastqRuns.Rd man/buildEnvironment.Rd man/demuxRuns.Rd man/downloadRuns.Rd man/getRunTableStatus.Rd man/lookUpKeys.Rd man/pipe.Rd man/setAnalysisVariables.Rd man/syncReports.Rd man/syncRuns.Rd

joshsbloom/swabseqr documentation built on Feb. 11, 2022, 5:14 p.m.

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