runGOEnrichment: runGOEnrichment Function

In joshuamwang/CAlbicansR: R wrapper to run CGD Gene Ontology Term Finder

Description

This function uses an RSelenium wrapper to access the CGD GO Term Finder site, run the search, and download results with corrected p-values.

Usage

runGOEnrichment(geneList = NULL, type = "P",
  server = "selenium.joshuawang.com", port = 4445)

Arguments

geneList	Object of class "vector". Should contain list of desired genes to be searched.
type	Object of class "character". Type of ontology: P for Process, F for Function, C for Component. Defaults to P.
server	Object of class "character". Users are encouraged to setup a local RSelenium instance. Defaults to a remote server.
port	Object of class "integer". Defaults to port 4445.

Examples

geneList <- c("orf19.610","orf19.4884","orf19.5992","WOR3","AHR1","CZF1")
runGOEnrichment(geneList,type='F')

joshuamwang/CAlbicansR documentation built on May 17, 2019, 11:17 p.m.