Files in joshwlambert/relaxedDAISIE
Reproduce Relaxed-rate DAISIE Paper
.Rbuildignore
.Rprofile
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/test-coverage.yaml
.gitignore
.zenodo.json
DESCRIPTION
LICENSE.md
NAMESPACE
R/calc_aic.R
R/calc_rr_cr_diff.R
R/choose_best_model.R
R/daisie_results_as_df.R
R/data.R
R/relaxedDAISIE-package.R
README.md
codecov.yml
data-raw/create_islands.R
data/Canaries.rda
data/Comoros.rda
data/Galapagos.rda
data/Galapagos_2type.rda
data/Hawaii.rda
data/Hawaii_2type.rda
data/Marquesas.rda
data/Marquesas_2type.rda
data/New_Caledonia.rda
data/SaoTome_Principe.rda
inst/bash/README.md
inst/bash/bash_config.sh
inst/bash/install_relaxedDAISIE.sh
inst/bash/submit_canaries_models.sh
inst/bash/submit_comoros_models.sh
inst/bash/submit_galapagos_models.sh
inst/bash/submit_hawaii_models.sh
inst/bash/submit_marquesas_models.sh
inst/bash/submit_new_caledonia_models.sh
inst/bash/submit_saotome_principe_models.sh
inst/extdata/bird_mcc_tree/bird_mcc_tree.nex
inst/extdata/plotting_data/archipelagos.rds
inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_1.README.html
inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_1.VERSION.txt
inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_1.cpg
inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_1.dbf
inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_1.prj
inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_1.shp
inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_1.shx
inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_10.README.html
inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_10.VERSION.txt
inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_10.cpg
inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_10.dbf
inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_10.prj
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inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_15.README.html
inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_15.VERSION.txt
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inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_20.README.html
inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_20.VERSION.txt
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inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_30.README.html
inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_30.VERSION.txt
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inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_5.README.html
inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_graticules_5.VERSION.txt
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inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_wgs84_bounding_box.README.html
inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_wgs84_bounding_box.VERSION.txt
inst/extdata/plotting_data/ne_110m_graticules_all/ne_110m_wgs84_bounding_box.cpg
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inst/extdata/plotting_data/ne_110m_wgs84_bounding_box/ne_110m_wgs84_bounding_box.README.html
inst/extdata/plotting_data/ne_110m_wgs84_bounding_box/ne_110m_wgs84_bounding_box.VERSION.txt
inst/extdata/plotting_data/ne_110m_wgs84_bounding_box/ne_110m_wgs84_bounding_box.cpg
inst/extdata/plotting_data/ne_110m_wgs84_bounding_box/ne_110m_wgs84_bounding_box.dbf
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inst/extdata/plotting_data/ne_110m_wgs84_bounding_box/ne_110m_wgs84_bounding_box.shp
inst/extdata/plotting_data/ne_110m_wgs84_bounding_box/ne_110m_wgs84_bounding_box.shx
inst/extdata/raw_daisie_output/Canaries/Canaries_cr_dd_1.rds
inst/extdata/raw_daisie_output/Canaries/Canaries_cr_dd_10.rds
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inst/extdata/raw_daisie_output/Canaries/Canaries_rr_gam_dd_1.rds
inst/extdata/raw_daisie_output/Canaries/Canaries_rr_gam_dd_10.rds
inst/extdata/raw_daisie_output/Canaries/Canaries_rr_gam_dd_2.rds
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inst/scripts/plot_map.R
inst/scripts/rr_cr_diff.R
inst/scripts/rr_cr_diff_upper_bound.R
inst/scripts/table_model_success.R
inst/scripts/table_relaxed.R
inst/scripts/table_relaxed_post_hoc.R
inst/scripts/test_rr_gam.R
man/Canaries.Rd
man/Comoros.Rd
man/Galapagos.Rd
man/Galapagos_2type.Rd
man/Hawaii.Rd
man/Hawaii_2type.Rd
man/Marquesas.Rd
man/Marquesas_2type.Rd
man/New_Caledonia.Rd
man/SaoTome_Principe.Rd
man/calc_aic.Rd
man/calc_aicc.Rd
man/calc_rr_cr_diff.Rd
man/choose_best_model.Rd
man/daisie_results_as_df.Rd
man/relaxedDAISIE-package.Rd
relaxedDAISIE.Rproj
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
renv/settings.json
tests/testthat.R
tests/testthat/test-calc_aic.R
tests/testthat/test-calc_rr_cr_diff.R
tests/testthat/test-choose_best_model.R
tests/testthat/test-daisie_results_as_df.R
