relaxedDAISIE: Reproduce Relaxed-rate DAISIE Paper

#' Community phylogenetic data on the birds of the Canary Islands
#'
#' A dataset containing the age of the archipelago, number of species on
#' mainland not present on the island, and each colonising clade with
#' colonisation and branching times, endemicity status, missing species, and the
#' type of species.
#'
#' @format An object of class \code{list} of length 48:
#' \describe{
#'   \item{island_age}{Age of the island}
#'   \item{not_present}{Number of mainland species that did not colonise the
#'   island}
#'   \item{colonist_name}{The name of the colonising clade}
#'   \item{branching_times}{The age of the island and the colonisation and
#'   subsequent branching times for a clade}
#'   \item{stac}{Endemicity status for a clade}
#'   \item{missing_species}{Number of species missing from a phylogeny of a
#'   clade}
#'   \item{type1or2}{Defines what type of species are in a clade, used for
#'   2-type analysis}
#'   ...
#' }
#' @source Valente et al. (2020) doi:
#' \url{https://doi.org/10.1038/s41586-020-2022-5}
"Canaries"

#' Community phylogenetic data for the birds of Comoros archipelago
#'
#' A dataset containing the age of the archipelago, number of species on
#' mainland not present on the island, and each colonising clade with
#' colonisation and branching times, endemicity status, missing species, and the
#' type of species.
#'
#' @format An object of class \code{list} of length 30:
#' \describe{
#'   \item{island_age}{Age of the island}
#'   \item{not_present}{Number of mainland species that did not colonise the
#'   island}
#'   \item{colonist_name}{The name of the colonising clade}
#'   \item{branching_times}{The age of the island and the colonisation and
#'   subsequent branching times for a clade}
#'   \item{stac}{Endemicity status for a clade}
#'   \item{missing_species}{Number of species missing from a phylogeny of a
#'   clade}
#'   \item{type1or2}{Defines what type of species are in a clade, used for
#'   2-type analysis}
#'   ...
#' }
#' @source Valente et al. (2020) doi:
#' \url{https://doi.org/10.1038/s41586-020-2022-5}
"Comoros"

#' Community phylogenetic data for the birds of the Galapagos archipelago
#'
#' A dataset containing the age of the archipelago, number of species on
#' mainland not present on the island, and each colonising clade with
#' colonisation and branching times, endemicity status, missing species, and the
#' type of species.
#'
#' @format An object of class \code{list} of length 9:
#' \describe{
#'   \item{island_age}{Age of the island}
#'   \item{not_present}{Number of mainland species that did not colonise the
#'   island}
#'   \item{colonist_name}{The name of the colonising clade}
#'   \item{branching_times}{The age of the island and the colonisation and
#'   subsequent branching times for a clade}
#'   \item{stac}{Endemicity status for a clade}
#'   \item{missing_species}{Number of species missing from a phylogeny of a
#'   clade}
#'   \item{type1or2}{Defines what type of species are in a clade, used for
#'   2-type analysis}
#'   ...
#' }
#' @source Valente et al. (2020) doi:
#' \url{https://doi.org/10.1038/s41586-020-2022-5}
"Galapagos"

#' Community phylogenetic data for the birds of the Hawaii archipelago
#'
#' A dataset containing the age of the archipelago, number of species on
#' mainland not present on the island, and each colonising clade with
#' colonisation and branching times, endemicity status, missing species, and the
#' type of species.
#'
#' @format An object of class \code{list} of length 9:
#' \describe{
#'   \item{island_age}{Age of the island}
#'   \item{not_present}{Number of mainland species that did not colonise the
#'   island}
#'   \item{colonist_name}{The name of the colonising clade}
#'   \item{branching_times}{The age of the island and the colonisation and
#'   subsequent branching times for a clade}
#'   \item{stac}{Endemicity status for a clade}
#'   \item{missing_species}{Number of species missing from a phylogeny of a
#'   clade}
#'   \item{type1or2}{Defines what type of species are in a clade, used for
#'   2-type analysis}
#'   ...
#' }
#' @source Valente et al. (2020) doi:
#' \url{https://doi.org/10.1038/s41586-020-2022-5}
"Hawaii"

#' Community phylogenetic data for the birds of the Marquesas archipelago
#'
#' A dataset containing the age of the archipelago, number of species on
#' mainland not present on the island, and each colonising clade with
#' colonisation and branching times, endemicity status, missing species, and the
#' type of species.
#'
#' @format An object of class \code{list} of length 15:
#' \describe{
#'   \item{island_age}{Age of the island}
#'   \item{not_present}{Number of mainland species that did not colonise the
#'   island}
#'   \item{colonist_name}{The name of the colonising clade}
#'   \item{branching_times}{The age of the island and the colonisation and
#'   subsequent branching times for a clade}
#'   \item{stac}{Endemicity status for a clade}
#'   \item{missing_species}{Number of species missing from a phylogeny of a
#'   clade}
#'   \item{type1or2}{Defines what type of species are in a clade, used for
#'   2-type analysis}
#'   ...
#' }
#' @source Valente et al. (2020) doi:
#' \url{https://doi.org/10.1038/s41586-020-2022-5}
"Marquesas"

#' Community phylogenetic data for the birds of the New Caledonia archipelago
#'
#' A dataset containing the age of the archipelago, number of species on
#' mainland not present on the island, and each colonising clade with
#' colonisation and branching times, endemicity status, missing species, and the
#' type of species.
#'
#' @format An object of class \code{list} of length 46:
#' \describe{
#'   \item{island_age}{Age of the island}
#'   \item{not_present}{Number of mainland species that did not colonise the
#'   island}
#'   \item{colonist_name}{The name of the colonising clade}
#'   \item{branching_times}{The age of the island and the colonisation and
#'   subsequent branching times for a clade}
#'   \item{stac}{Endemicity status for a clade}
#'   \item{missing_species}{Number of species missing from a phylogeny of a
#'   clade}
#'   \item{type1or2}{Defines what type of species are in a clade, used for
#'   2-type analysis}
#'   ...
#' }
#' @source Valente et al. (2020) doi:
#' \url{https://doi.org/10.1038/s41586-020-2022-5}
"New_Caledonia"

#' Community phylogenetic data for the birds of the Sao Tome and Principe
#' archipelago
#'
#' A dataset containing the age of the archipelago, number of species on
#' mainland not present on the island, and each colonising clade with
#' colonisation and branching times, endemicity status, missing species, and the
#' type of species.
#'
#' @format An object of class \code{list} of length 38:
#' \describe{
#'   \item{island_age}{Age of the island}
#'   \item{not_present}{Number of mainland species that did not colonise the
#'   island}
#'   \item{colonist_name}{The name of the colonising clade}
#'   \item{branching_times}{The age of the island and the colonisation and
#'   subsequent branching times for a clade}
#'   \item{stac}{Endemicity status for a clade}
#'   \item{missing_species}{Number of species missing from a phylogeny of a
#'   clade}
#'   \item{type1or2}{Defines what type of species are in a clade, used for
#'   2-type analysis}
#'   ...
#' }
#' @source Valente et al. (2020) doi:
#' \url{https://doi.org/10.1038/s41586-020-2022-5}
"SaoTome_Principe"

#' Community phylogenetic data for the birds of the Galapagos archipelago
#'
#' A dataset containing the age of the archipelago, number of species on
#' mainland not present on the island, and each colonising clade with
#' colonisation and branching times, endemicity status, missing species, and the
#' type of species. With one island colonist designated as a different type.
#'
#' @format An object of class \code{list} of length 9:
#' \describe{
#'   \item{island_age}{Age of the island}
#'   \item{not_present}{Number of mainland species that did not colonise the
#'   island}
#'   \item{colonist_name}{The name of the colonising clade}
#'   \item{branching_times}{The age of the island and the colonisation and
#'   subsequent branching times for a clade}
#'   \item{stac}{Endemicity status for a clade}
#'   \item{missing_species}{Number of species missing from a phylogeny of a
#'   clade}
#'   \item{type1or2}{Defines what type of species are in a clade, used for
#'   2-type analysis}
#'   ...
#' }
#' @source Valente et al. (2020) doi:
#' \url{https://doi.org/10.1038/s41586-020-2022-5}
"Galapagos_2type"

#' Community phylogenetic data for the birds of the Hawaii archipelago
#'
#' A dataset containing the age of the archipelago, number of species on
#' mainland not present on the island, and each colonising clade with
#' colonisation and branching times, endemicity status, missing species, and the
#' type of species. With one island colonist designated as a different type.
#'
#' @format An object of class \code{list} of length 9:
#' \describe{
#'   \item{island_age}{Age of the island}
#'   \item{not_present}{Number of mainland species that did not colonise the
#'   island}
#'   \item{colonist_name}{The name of the colonising clade}
#'   \item{branching_times}{The age of the island and the colonisation and
#'   subsequent branching times for a clade}
#'   \item{stac}{Endemicity status for a clade}
#'   \item{missing_species}{Number of species missing from a phylogeny of a
#'   clade}
#'   \item{type1or2}{Defines what type of species are in a clade, used for
#'   2-type analysis}
#'   ...
#' }
#' @source Valente et al. (2020) doi:
#' \url{https://doi.org/10.1038/s41586-020-2022-5}
"Hawaii_2type"

#' Community phylogenetic data for the birds of the Marquesas archipelago
#'
#' A dataset containing the age of the archipelago, number of species on
#' mainland not present on the island, and each colonising clade with
#' colonisation and branching times, endemicity status, missing species, and the
#' type of species. With one island colonist designated as a different type.
#'
#' @format An object of class \code{list} of length 15:
#' \describe{
#'   \item{island_age}{Age of the island}
#'   \item{not_present}{Number of mainland species that did not colonise the
#'   island}
#'   \item{colonist_name}{The name of the colonising clade}
#'   \item{branching_times}{The age of the island and the colonisation and
#'   subsequent branching times for a clade}
#'   \item{stac}{Endemicity status for a clade}
#'   \item{missing_species}{Number of species missing from a phylogeny of a
#'   clade}
#'   \item{type1or2}{Defines what type of species are in a clade, used for
#'   2-type analysis}
#'   ...
#' }
#' @source Valente et al. (2020) doi:
#' \url{https://doi.org/10.1038/s41586-020-2022-5}
"Marquesas_2type"