Description Usage Arguments Examples
View source: R/getRegulatedGenesByTF.R
Shows all the genes regulated by a Transcription Factor indicated by the user
1 | getRegulatedGenesByTF(database, tf)
|
database |
RSQLite object imported previously from an SQLite database file to R |
mart |
Dataset table into the database, use the syntax "dataset" |
1 2 3 4 5 6 7 8 9 10 11 12 13 | ## import the SQLite database
## path_sqlite3 <- file.choose()
regulon <- DBI::dbConnect(RSQLite::SQLite(), path_sqlite3)
listDatasets(regulon)
listAttributes(regulon, "TF")
getAttr(
database = regulon,
mart = "GENE",
filters = c("operon_id", "operon_name"),
value = c("ECK125235983","cmoM-mukFEB" ),
cond = "and")
GetRegulatedGenesByTF(regulon, "Ara")
dbDisconnect(regulon)
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