getRegulatedGenesByTF: getRegulatedGenesByTF

In josschavezf/regulonDB: Management of SQLite Databases and Query of Fields tools

Description

Shows all the genes regulated by a Transcription Factor indicated by the user

Usage

getRegulatedGenesByTF(database, tf)

Arguments

database	RSQLite object imported previously from an SQLite database file to R
mart	Dataset table into the database, use the syntax "dataset"

Examples

## import the SQLite database
## path_sqlite3 <- file.choose()
regulon <- DBI::dbConnect(RSQLite::SQLite(), path_sqlite3)
listDatasets(regulon)
listAttributes(regulon, "TF")
getAttr(
database = regulon,
mart = "GENE",
filters = c("operon_id", "operon_name"),
value = c("ECK125235983","cmoM-mukFEB" ),
cond = "and")
GetRegulatedGenesByTF(regulon, "Ara")
 dbDisconnect(regulon)

josschavezf/regulonDB documentation built on Aug. 14, 2019, 4:43 a.m.