EnhancedTxDb-class: EnhancedTxDb objects

In jotsetung/EnhancedTxDbs: Storing annotation in TranscriptDb objects

Description

The EnhancedTxDb class is a container for a TxDb object and the associated annotation information.

Details

A EnhancedTxDb object i

Constructors

EnhancedTxDb(txdb, gnAnnot, txAnnont, exAnnot,...): Constructor to create a EnhancedTxDb object based on splice graph edge counts, the associated splice graph structure and the

txdb

TxDb

gnAnnot

data.frame

txAnnont

data.frame

exAnnont

data.frame

Accessors

In the code below, x refers to a EnhancedTxDb object.

transcriptsBy(x): Returns transcripts grouped by supplied elements

transcripts(x): Returns all transcripts

exonsBy(x): Returns all exons

exons(x): Returns all exons

Author(s)

D. Bindreither

See Also

• TxDb-class

Examples

## Not run: 
etxdb <- EnhancedTxDb()

## End(Not run)

jotsetung/EnhancedTxDbs documentation built on May 19, 2019, 9:41 p.m.