getMirbaseFamForMature: Retrieves some more information for a mature miRNA ID from...

In jotsetung/mirtarbase-db: miRTarBase miRNA-target interaction database

Description

This functions returns a data.frame with various informations for a given mature miRNA ID from the mirbase database (provided by the mirbase.db Bioconductor package).

getMirbaseFamForMature: search for a single miRNA.

mgetMirbaseFamForMature: search for multiple miRNAs.

Usage

getMirbaseFamForMature( x, operator="=" )
mgetMirbaseFamForMature( x, operator="=", ifnotfound=NA )

Arguments

x	The mature miRNA ID(s).
operator	The operator to search for the miRNA IDs. One of “=”, “!=”, “like” and “not like”.
ifnotfound	Will be returned if a miRNA is not found.

Details

The function returns the contents of the mirbase database tables “mirna\_mature” and “mirna”.

Value

A data.frame or a list of data.frames (in the case of mgetMirbaseForMature).

Note

These functions are only wrapper functions for getMirbaseForMature( x, tables=c( "mirna", "mirna_prefam" ) ).

Author(s)

Johannes Rainer

See Also

getMirbaseForMature, mgetMirbaseForMature

Examples

Res <- getMirbaseFamForMature( x="hsa-miR-221-3p" )
colnames( Res )

Res <- mgetMirbaseFamForMature( c( "hsa-miR-221-3p", "hsa-miR-221-5p" ) )
class( Res )
length( Res )

## join to a data.frame
Res <- do.call( "rbind", Res )

jotsetung/mirtarbase-db documentation built on May 19, 2019, 9:42 p.m.