Files in jr-leary7/YehLabHTS
This package makes the Yeh Lab's HTS drug discovery analyses reproducible.
.DS_Store
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
NAMESPACE
R/2018ExpressionTable.R
R/compute_IC50.R
R/data.R
R/generateBlissMatrix.R
R/kinaseSubset.R
R/parseHTSData.R
R/readData.R
R/reformatMetadata.R
R/zzz.R
README.md
YehLabHTS.Rproj
bestPara.txt
data/.DS_Store
data/Combined Screen Compound List 160912.xlsx
data/Sequenced_PDX_CAF_lines.xlsx
data/metadata_and_library_key.RData
data/normalized_data.RData
data/raw_plates.RData
data/rawdata/.DS_Store
data/rawdata/20161216 P100422T1p7m879 1-21 Entinostat-I-BET151.xlsx
data/rawdata/20161216 P100422T1p7m879 22-42 Paricalcitol-FOLFOX 22-42.xlsx
data/rawdata/2016:P140227T1-CAF_Entinostat 6X6_reordered with prism conversion.xlsx
data/rawdata/2016:P140227T1-CAF_IBET151 6X6_reordered with prism conversion.xlsx
data/rawdata/P100422T1p7m299_201800601_Abraxane_Dasatinib.xlsx
data/rawdata/P100422T1p7m299_201800601_FOLFOX_FOLFIRINOX_-note crash on plate 1 and 14-.xlsx
data/rawdata/P100422T1pm862_Gemcitabine-Entinostat-Realigned.xlsx
data/rawdata/P100422T1pm862_MLN8237-Dinaciclib-Realigned.xlsx
data/rawdata/P130411T1p2m862_20180527 _Abraxane_Dasatinib-note missing readings-.xlsx
data/rawdata/P130411T1p2m862_20180527_FOLFOX_FOLFIRINOX_-note missing readings-.xlsx
data/rawdata/P130411T1p2m862_Gemcitabine-Entinostat-Realigned.xlsx
data/rawdata/P130411T1p2m862_MLN8237-Dinaciclib-Realigned.xlsx
data/rawdata/P140710N1_NAF_20180517_Abraxane_Dasatinib.xlsx
data/rawdata/P140710N1_NAF_20180517_FOLFOX_FOLFIRINOX_.xlsx
data/rawdata/P140710N1_NAF_Gemcitabine-Entinostat-Realigned.xlsx
data/rawdata/P140710N1_NAF_MLN8237-Dinaciclib-Realigned.xlsx
data/rawdata/P170119T1_CAF-Gemcitabine-Entinostat-Realigned.xlsx
data/rawdata/P170119T1_CAF-MLN8237-Dinaciclib-Realigned.xlsx
data/rawdata/P170119T1_CAF_201800601_Abraxane_Dasatinib.xlsx
data/rawdata/P170119T1_CAF_201800601_FOLFOX_FOLFIRINOX.xlsx
data/v3_YehLab_compound_library_synergy_screen_metadata.xlsx
ic_results.Rdata
in_vitro_exp_df.rds
man/dot-onLoad.Rd
man/drug_results.Rd
man/generateBlissMatrix.Rd
man/parseHTSData.Rd
man/readData.Rd
man/reformatMetadata.Rd
