assoc_plot: assoc_plot

In jrs95/gassocplot: Regional association plots

assoc_plot

Description

assoc_plot plots a scatter graph of associations (e.g. log10 p-values)

Usage

assoc_plot(
  data,
  corr = NULL,
  corr.top = NULL,
  ylab = NULL,
  title = NULL,
  subtitle = NULL,
  type = "log10p",
  x.min = NULL,
  x.max = NULL,
  top.marker = NULL,
  legend = TRUE
)

Arguments

data	data.frame with markername (marker), chromosome (chr), position (pos) and either z-statistics (z) or probabilities (prob) columns
corr	correlation matrix between markers
corr.top	correlation statistics between the top marker and the rest of the markers
ylab	the y-axis label
title	title of the plot
subtitle	subtitle of the plot
type	the type of the plot either log10p or probabilities
x.min	start of region
x.max	end of region
top.marker	the top associated marker, i.e. the marker with the largest -log10p or probability
legend	add r2 legend

Author(s)

James R Staley <[e-mail]>

jrs95/gassocplot documentation built on April 2, 2024, 7:11 p.m.