stack_assoc_plot: stack_assoc_plot

In jrs95/gassocplot: Regional association plots

stack_assoc_plot

Description

stack_assoc_plot plots stacked regional association plots

Usage

stack_assoc_plot(
  markers,
  z,
  corr = NULL,
  corr.top = NULL,
  traits,
  ylab = NULL,
  type = "log10p",
  x.min = NULL,
  x.max = NULL,
  top.marker = NULL,
  legend = TRUE
)

Arguments

markers	data.frame of markers with markername (marker), chromosome (chr) and position (pos)
z	matrix of Z-scores or probabilities with one column for each trait
corr	matrix of correlation statistics between markers
corr.top	correlation statistics between the top marker and the rest of the markers
traits	trait names
ylab	the y-axis label
type	the type of the plot either log10p or probabilities
x.min	start of region
x.max	end of region
top.marker	the top associated marker, i.e. the marker with the largest -log10p or probability
legend	add r2 legend

Author(s)

James R Staley <[e-mail]>

jrs95/gassocplot documentation built on April 2, 2024, 7:11 p.m.