Man pages for jrthompson54/DGE.Tools2
A function library to facilitate Differential Gene Expression Analysis
| addFootnote | Function footnote |
| add_numbered_colnames | add_numbered_colnames |
| baseFont | Function baseFont |
| baseTheme | Function baseTheme |
| cdfPlot | Deluxe CDF Plots |
| checkSex | Function checkSex |
| comparePlot | Function ComparePlot |
| comparePrep | Function comparePrep |
| convertCounts | Function convertCounts |
| dflist_to_excel | Function dflist_to_excel |
| df_to_excel | Function df_to_excel |
| dot-extractCol1 | Function .extractCol1 |
| dot-extractCol2 | Function .extractCol2 |
| eBayes_autoprop | Function eBayes_autoprop |
| extractCol | Function extractCol |
| facetTheme | Function facetTheme |
| get_mds | get_mds |
| getXrange | Function getXrange |
| getYrange | Function getYrange |
| ggplotMDS | Function ggplotMDS |
| isoformFrac | Function isoformFrac |
| logRatioPlot | Function logRatioPlot |
| lowIntFilter | Function lowIntFilter |
| mapDGEobj | Function mapDGEobj |
| MDS_var_explained | Function MDS_var_explained |
| NoLegend | Function NoLegend |
| NoXGrid | Function NoXGrid |
| NoXlab | Function NoXlab |
| NoYGrid | Function NoYGrid |
| NoYlab | Function NoYlab |
| obsPlot | Function obsPlot |
| obsPlot2 | Function obsPlot2 |
| OmicsoftToDgeObj | Function OmicsoftToDgeObj |
| plotDisp | Function plotDisp |
| plotNorm | Function plotNorm |
| plotPvalHist | Function plotPvalHist |
| printAndSave | Function printAndSave |
| printWithFootnote | Function printWithFootnote |
| profilePlot | Profile Plots |
| QCplots | Function QCplots |
| rsq_calc | Function rsq_calc |
| runContrasts | Function runContrasts |
| runEdgeRNorm | Function runEdgeRNorm (edgeR normlization ) |
| runIHW | Function runIHW |
| runPower | Function runPower (DGE.Tools2) |
| runQvalue | Function runQvalue |
| runSVA | Function runSVA |
| runVoom | Function runVoom (voom then lmFit) |
| setLegendPosition | Function setLegendPosition |
| summarizeSigCounts | Function summarizeSigCounts |
| tidyContrasts | Function tidyContrasts |
| tidyIntensity | Function tidyIntensity |
| topTable.merge | Function topTable.merge |
| tpm.direct | Function tpm.direct |
| tpm.on.subset | Function tpm.on.subset |
| volcanoPlot | Deluxe Volcano Plots |
| voomWorkflow | Function voomWorkflow |
| xrange | Function xrange |
| yrange | Function yrange |
