topTable.merge: Function topTable.merge

In jrthompson54/DGE.Tools2: A function library to facilitate Differential Gene Expression Analysis

Description

Take a list of topTable dataframes and consolidate output for specified columns. Optionally output as an Excel spreadsheet. Should work on any named list of dataframes where each member of the list has the same columns.

Usage

topTable.merge(
  ttlist,
  colNames = c("logFC", "AveExpr", "P.Value", "adj.P.Val"),
  digits = c(2, 2, 4, 3)
)

Arguments

ttlist	A named list of topTable data.frames which all have the same colnames and same row counts. The dataframes in the list should have rownames (geneIDs).
colNames	The list of column names of the data column to extract to a matrix (Default = c("logFC", "AdeExpr", "P.Value", "adj.P.Val"))
digits	Number of decimal places for specified columns. Should be same length as colNames.(Default = c(2, 2, 4, 3)). If one value supplied, it is used for all columns.

Value

A matrix containing the extracted columns

Author(s)

John Thompson, [e-mail]

Examples

MyContrastTable  = topTable.merge (topTablelist)

jrthompson54/DGE.Tools2 documentation built on May 12, 2021, 8:47 p.m.