motifCountMatrix: Motif count matrix.
In jsalojar/TFbindR: Identification and Counting of the Occurence of Motifs in a Set of Promoter Sequences. Motif Enrichment Analysis
Description
Usage
Arguments
Value
View source: R/motifCountMatrix.R
Description
The function can be used to retrieve a subset of the motif count matrix stored in a promoter.DB object, for a set of genes given as input. The promoter.DB objets are as generated by the functions makePromoterDBfromFimo or makePromoterDBfromRE.
Usage
1
motifCountMatrix(Genes, promoterDB = "promoter.DB", strand = "both")
Arguments
Genes
A list of the genes of interest.
promoterDB
Promoter.DB object,
strand
A character string that can take value: "plus", "minus" or "both".
Value
A promoter.DB object
jsalojar/TFbindR documentation built on Dec. 9, 2019, 12:16 a.m.
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Description Usage Arguments Value
View source: R/motifCountMatrix.R
Description
The function can be used to retrieve a subset of the motif count matrix stored in a promoter.DB object, for a set of genes given as input. The promoter.DB objets are as generated by the functions makePromoterDBfromFimo or makePromoterDBfromRE.
Usage
1 | motifCountMatrix(Genes, promoterDB = "promoter.DB", strand = "both")
|
Arguments
Genes |
A list of the genes of interest. |
promoterDB |
Promoter.DB object, |
strand |
A character string that can take value: "plus", "minus" or "both". |
Value
A promoter.DB object
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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