Man pages for jscamac/edmaps
Estimate Likelihood of Pest Establishment
| aggregate_raster | Downscale raster resolution |
| alphahull_sf | Convert an alpha hull into an sf object |
| arrivals_by_containers | Estimates pest arrivals by containers |
| arrivals_by_fertiliser | Estimates pest arrivals by fertiliser imports |
| arrivals_by_food | Estimates pest arrivals through imported fresh food |
| arrivals_by_goods | Estimates pest arrivals through imported goods |
| arrivals_by_machinery | Estimates pest arrivals through imported machinery |
| arrivals_by_mail | Estimates pest arrivals through mail |
| arrivals_by_nurserystock | Estimates pest arrivals through imported nursery stock |
| arrivals_by_residents | Estimates pest arrivals by returning residents |
| arrivals_by_torres | Estimates pest arrivals due to Torres Strait air passengers |
| arrivals_by_tourists | Estimates pest arrival due to tourists |
| arrivals_by_vessels | Estimates pest arrivals by vessels |
| arrivals_by_wind | Estimates pest arrivals via wind |
| binarize_and_aggregate | Binarize a categorical raster and optionally aggregate |
| calc_EE | Calculate establishment probability |
| calc_pathway_pr | Calculate the pathway-specific probability of pest arrival |
| calc_proportion | Calculate raster cell values as proportions |
| calculate_median | Calculate median of raster objects |
| captured_by_ncells | Calculate establishment likelihood captured in top n cells |
| combine_arrivals | Sum arrivals across entry pathways |
| combine_pathways | Calculate the probability of arrival across pathways |
| container_weights | Creates a weight by postcode for each major port |
| download_worldclim2 | Download climate layers from WorldClim 2.0 |
| establishment_likelihood | Estimate establishment likelihood |
| excel_to_plan | Create a drake plan using tabular species data |
| expand_range | Expand sequences |
| exp_function | Exponentiate raster values |
| extract_highest_ncells | Returns a raster with values for the n cells with highest... |
| extract_worldclim2 | Extract WorldClim 2.0 data |
| fertiliser_by_nrm | Create fertiliser by nrm sf object |
| fertiliser_weight | Create a fertiliser weight raster |
| fill_na | Modify NAs within neighbourhood of data cells |
| gdal_reproject | Reproject and resample a raster |
| get_airport_dist | Estimate distance to nearest Australian international airport |
| get_gbif_records | Downloads GBIF records of species |
| initialise_raster | Create an empty raster |
| interactive_map | Produce an interactive html map |
| max_normalize | Raster max normalization |
| min_max_normalize | Raster min-max normalization |
| na_mask | Create a mask raster |
| ncells_4_threshold | Extract number of cells required to meet threshold proportion... |
| plan_globals | Create a drake plan describing targets relating to global... |
| plot_establishment_captured | Plots the cumulative proportion of establishment likelihood... |
| plot_raster | Plot a raster |
| port_weights | Create raster giving the establishment likelihoods relating... |
| pr_establishment | Calculate probability of establishment |
| range_bag | Fit and project range bag model |
| rasterize_range | Rasterize species range |
| rasterize_vector | Rasterize spatial vector dataset |
| rasterize_wind | Rasterize wind data |
| record_flagger | Flags records that occur in countries that are not reported... |
| rle_compress | Compress raster data using run length encoding |
| species_plan | Generate a drake plan for a species |
| static_map | Produce a static map of establishment likelihood |
| step_function | Apply a step function to raster values |
| suitability | Combine abiotic and biotic layers to create suitability... |
| surveillance_coverage | Calculate the proportion of total establishment likelihood... |
| threshold_raster | Threshold raster |
| weight_airport_dist | Transform airport distances |
