View source: R/get_gbif_records.R
get_gbif_records | R Documentation |
Downloads GBIF records of species, removing auxiliary columns and records recorded prior to a specified year, or that have coordinate uncertainty above a specified amount.
get_gbif_records( taxon, min_year, coord_uncertainty, basis_of_record, country, method = c("auto", "search", "download"), auto_threshold = 10000, username, pwd, email, retries = 10, cleanup = TRUE )
taxon |
Character. Species taxonomic name. |
min_year |
Integer. The minimum year for which records should be
collated. Default is |
coord_uncertainty |
Integer. The maximum allowable documented coordinate
uncertainty (in metres). If specified, this argument will result in removal
of any records that have a documented uncertainty above this limit. Records
with no uncertainty documented will be returned regardless of the value of
|
basis_of_record |
An optional character vector of one or more of: 'FOSSIL_SPECIMEN', 'HUMAN_OBSERVATION', 'LITERATURE', 'LIVING_SPECIMEN', 'MACHINE_OBSERVATION', 'MATERIAL_SAMPLE', 'OBSERVATION', 'PRESERVED_SPECIMEN', or 'UNKNOWN', giving the set of allowable values for the basis of observation. |
country |
An optional 2 letter ISO code defining the country within which occurrences should be contained. See https://www.iso.org/obp/ui/#search for valid ISO codes (see "Alpha-2 code") column. |
method |
Either |
auto_threshold |
Integer. If |
username |
GBIF username, required when method is |
pwd |
GBIF password, required when method is |
email |
Email address, required when |
retries |
If |
cleanup |
Logical. Should temporary files associated with
|
This function is a wrapper of rgbif
such that it can be readily
used with the CoordinateCleaner
package.
A data.frame
of species occurrence records.
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