dg_bootstrap: Bootstrap procedure to estimate the uncertainty of free...

In jschmiedel/tempura: Fit free energies of folding and binding from doubledeepPCA data

Description

Bootstrap procedure to estimate the uncertainty of free energies parameters of a model

Usage

dg_bootstrap(
  dataset_folder,
  model_name,
  iteration = 1,
  return_model = FALSE,
  maxit = 10000
)

Arguments

dataset_folder	absolute path to the dataset folder, is created if non-existent
model_name	name of the model that should be computed on the dataset
iteration	integer, to calucate a set of models and get reproducible results
return_model	logical, if TRUE, returns a data.table with fitted values for all model parameters, default = FALSE
maxit	integer, maximum number of iterations by optim algorithm, default = 1e4

Value

writes the boostrapped model parameters as .txt file to $dataset_folder/$model_name/tmp/dg_boostrap_$iteration

jschmiedel/tempura documentation built on Nov. 13, 2020, 3:53 a.m.