dg_collect_models: Reads and collects individual dg models from tmp folder

In jschmiedel/tempura: Fit free energies of folding and binding from doubledeepPCA data

Description

Reads and collects individual dg models from tmp folder

Usage

dg_collect_models(
  dataset_folder,
  model_name,
  model_averaging = "mean",
  which_test_set = 0,
  stage = "model"
)

Arguments

dataset_folder	absolute path to the dataset folder, is created if non-existent
model_name	name of the model that should be computed on the dataset
model_averaging	c("mean" [default], "median"), how to average estimated parameters over different train/test sets
which_test_set	for 0, the default, reads individual models from training/test sets, for a number greater 0, only reads models from this training/test set
stage	c("model" [default], "bootstrap", "pll"), which stage to collect models from, for bootstrap and pll stage, the functions adds their results to the dg_model.txt table

Value

returns a data.table with fitted values for all model parameters

jschmiedel/tempura documentation built on Nov. 13, 2020, 3:53 a.m.