processElements: Processes JSON as a vector of elements

processElementsR Documentation

Processes JSON as a vector of elements

Description

Processes JSON as a vector of elements

Usage

processElements(d)

Arguments

d

The JSON to process

Value

A data table with information about the probes representing a gene across all platrofms. A list if raw = TRUE. A 404 error if the given identifier does not map to any genes.

The fields of the output data.table are:

  • element.name: Name of the element. Typically the probeset name

  • element.description: A free text field providing optional information about the element

  • platform.ShortName: Shortname of the platform given by Gemma. Typically the GPL identifier.

  • platform.Name: Full name of the platform

  • platform.ID: Id number of the platform given by Gemma

  • platform.taxon: Species the platform was designed for

  • platform.taxonID: Id number of the species given by Gemma

  • platform.type: Type of the platform.

  • platform.description: Free text field describing the platform.

  • platform.troubled: Whether the platform is marked as troubled by a Gemma curator.


jsicherman/GemmAPI documentation built on March 25, 2024, 10:13 a.m.