processSamples: Processes JSON as a vector of samples

In jsicherman/GemmAPI: A wrapper for Gemma's Restful API to access curated gene expression data and differential expression analyses

Processes JSON as a vector of samples

Description

Processes JSON as a vector of samples

Usage

processSamples(d)

Arguments

d	The JSON to process

Value

A data table with information about the samples of the queried dataset. A list if raw = TRUE. A 404 error if the given identifier does not map to any object.

The fields of the output data.table are:

• sample.name: Internal name given to the sample.

• sample.ID: Internal ID of the sample

• sample.description: Free text description of the sample

• sample.outlier: Whether or not the sample is marked as an outlier

• sample.accession: Accession ID of the sample in it's original database

• sample.database: Database of origin for the sample

• sample.characteristics: Characteristics of the sample. This field is a data table

• sample.factorValues: Experimental factor values of the sample. This field is a data table

jsicherman/GemmAPI documentation built on Dec. 15, 2024, 8:59 a.m.