Files in jtlovell/GENESPACE

Synteny- and orthology-constrained comparative genomics

R/annotate_bed.R R/annotate_blast.R R/classify_genome.R R/clean_windows.R R/convert_input2v1.R R/find_contigsGapsTelos.R R/find_kmers.R R/gviz_utils.R R/init_genespace.R R/integrate_synteny.R R/parse_annotations.R R/plot_2genomes.R R/plot_contigs.R R/plot_hits.R R/plot_riparian.R R/query_genespace.R R/run_genespace.R R/run_mcscanx.R R/run_orthofinder.R R/set_syntenyParams.R R/slide_genome.R R/syntenic_orthogroups.R R/syntenic_pangenes.R R/synteny.R R/utils.R man/annotate_bed.Rd man/annotate_blast.Rd man/classify_genome.Rd man/clean_windows.Rd man/convert_input2v1.Rd man/find_contigsGapsTelos.Rd man/find_kmers.Rd man/gviz_utils.Rd man/init_genespace.Rd man/integrate_synteny.Rd man/parse_annotations.Rd man/plot_2genomes.Rd man/plot_contigs.Rd man/plot_hits.Rd man/plot_riparian.Rd man/query_genespace.Rd man/run_genespace.Rd man/run_mcscanx.Rd man/run_orthofinder.Rd man/set_syntenyParams.Rd man/slide_genome.Rd man/syntenic_orthogroups.Rd man/syntenic_pangenes.Rd man/synteny.Rd man/utils.Rd plot_2genomes.R readme.md