convert_input2v1: Convert input data formats

In jtlovell/GENESPACE: Synteny- and orthology-constrained comparative genomics

Convert input data formats

Description

convert_input2v1 Takes an existing GENESPACE <= v0.9.4 run, converts file formats and copies to a new directory which can be used for GENESPACE >= v1.0.0.

Usage

convert_input2v1(existingDir, v1Dir)

Arguments

existingDir	character string coercible to a file.path, pointing to an existing GENESPACE <= v0.9.4 run.
v1Dir	character string coercible to a file.path, pointing to a directory where you want to run GENESPACE >=v1.0.0

Details

Directly copies the peptide fasta files and required orthofinder files. Converts the 1-indexed gff to 0-indexed bed file and re-names them.

Value

nothing

Examples

## Not run: 
# coming soon

## End(Not run)

jtlovell/GENESPACE documentation built on Jan. 25, 2025, 6:39 a.m.