plot_contigs: Plot contigs, gaps and telomeres

In jtlovell/GENESPACE: Synteny- and orthology-constrained comparative genomics

Plot contigs, gaps and telomeres

Description

plot_contigs Plots the output from find_contigsGapsTelos

Usage

plot_contigs(
  cgt = NULL,
  cgtList = NULL,
  nColors = NULL,
  nRow = NULL,
  nCol = NULL,
  palette,
  ...
)

Arguments

cgt	The output from a single find_contigsGapsTelos call
cgtList	A named list of output from find_contigsGapsTelos
nColors	Integer, the number of colors to cycle through
nRow	Integer, the number of plot facet rows
nCol	Integer, the number of plot facet columns
palette	an R palette function
...	additional arguments passed to palette

jtlovell/GENESPACE documentation built on Jan. 25, 2025, 6:39 a.m.