This function provides users with validation on the PDB and HGNC database generated from the BCB420.2019.PDB package. It performs a MSA between the provided Transcript and PDB chain sequences to determine if the two sequenes are identical. It also verifies that for both the Transcript and PDB chain map to the same gene coordinates.
1 |
transcriptHGNC |
The stable transcript ID of a transcript |
chainID |
The ID of the PDB chain |
myDB |
The annotated database loaded in the environment |
gffData |
A dataframe containing the Gencode data imported manually by the user |
showConsensus |
A boolean value determining if the user would like to see the consensus sequence. Set to TRUE automatically |
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