validate: validate.R

In judyheewonlee/BCB420.2019.PDB: BCB420.2019.PDB

Description

This function provides users with validation on the PDB and HGNC database generated from the BCB420.2019.PDB package. It performs a MSA between the provided Transcript and PDB chain sequences to determine if the two sequenes are identical. It also verifies that for both the Transcript and PDB chain map to the same gene coordinates.

Usage

validate(transcriptHGNC, chainID, myDB, gffData, showConsensus = TRUE)

Arguments

transcriptHGNC	The stable transcript ID of a transcript
chainID	The ID of the PDB chain
myDB	The annotated database loaded in the environment
gffData	A dataframe containing the Gencode data imported manually by the user
showConsensus	A boolean value determining if the user would like to see the consensus sequence. Set to TRUE automatically

judyheewonlee/BCB420.2019.PDB documentation built on May 23, 2019, 9:50 a.m.