In julia-wrobel/VectraPolarisData: Vectra Polaris and Vectra 3 multiplex single-cell imaging data

knitr::opts_chunk$set(
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VectraPolarisData

The VectraPolarisData package provides two large multiplex immunofluorescence datasets, collected using Vectra 3 and Vectra Polaris instruments. Data included a study of lung cancer and a study of ovarian cancer, and are provided as objects of class SpatialExperiment.

Installation instructions

Now available in Bioconductor version 3.15! To install, use:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
}

BiocManager::install("VectraPolarisData")

Example

Here you can load data from the package. Data from the lung cancer study are loaded below.

library(VectraPolarisData)
spe_lung <- HumanLungCancerV3()
spe_lung

Data from the ovarian cancer study are loaded below.

spe_ovarian <- HumanOvarianCancerVP()
spe_ovarian

These datasets are provided as SpatialExperiment class objects. More detailed information about these datasets is available in the package vignette.

julia-wrobel/VectraPolarisData documentation built on Sept. 2, 2023, 1:40 p.m.