map_to_scanner: Map niftis from one scanner to another

In julia-wrobel/mica: Multi Image CDF Alignment (or multi site intensity harmonization by CDF alignment)

Description

This function reads in filepaths for a set of niftis from two scanners and maps niftis from one scanner to the other.

Usage

map_to_scanner(
  inpaths,
  outpath,
  subjects,
  scan_ids,
  scanner,
  map_from,
  map_to,
  grid_length = 1000,
  ...
)

Arguments

inpaths	List of paths to where nifti objects are stored.
outpath	Directory where mica normalized nifti objects will be stored.
subjects	List that denotes the subject id for each image. Alignment will occur at the subject level.
scan_ids	List of unique identifiers for each image.
scanner	Scanner on which each image was collected. Should be character vector same length as suubjects.
map_from	Character, name of scanner from which images will be mapped.
map_to	Character, name of scanner to which images will be mapped.
grid_length	Length of downsampled CDFs to be aligned.
...	Additional arguments passed to or from other functions.

Author(s)

Julia Wrobel [e-mail]

julia-wrobel/mica documentation built on Nov. 15, 2020, 8:41 p.m.