normalize_image: Normalize and save nifti object

In julia-wrobel/mica: Multi Image CDF Alignment (or multi site intensity harmonization by CDF alignment)

Description

Function used to mica-normalize nifti object based on inverse warping functions.

Usage

normalize_image(filepath, subject, scan_id, data, outpath, ...)

Arguments

filepath	Path to where nifti object is stored.
subject	Unique identifiers for the nifti object.
scan_id	Unique identifiers for the nifti object.
data	Data frame that includes the variable h_inv, which is the inverse warping function for normalization.
outpath	Directory where mica normalized nifti object will be stored.
...	Additional arguments passed to or from other functions.

Value

a data frame with a single vectorized image.

Author(s)

Julia Wrobel [e-mail]

julia-wrobel/mica documentation built on Nov. 15, 2020, 8:41 p.m.