API for julian-gehring/SomaticSignatures
Somatic Signatures
| Global functions | |
|---|---|
| MutationalSignatures | Man page |
| MutationalSignatures-class | Man page |
| SomaticSignatures | Man page |
| SomaticSignatures-package | Man page |
| assessNumberSignatures | Man page Source code |
| assessOneSignature | Source code |
| cluster-spectrum | Man page |
| clusterSpectrum | Man page Source code |
| constructMotifs3 | Source code |
| correlateSignatures | Source code |
| coscor | Source code |
| cospos | Source code |
| cossim | Source code |
| decomposition-signatures | Man page |
| dfConvertColumns | Man page Source code |
| findSignatures | Man page Source code |
| fitted | Man page |
| fitted,MutationalSignatures-method | Man page |
| gcContent | Man page Source code |
| hs-chrs | Man page |
| hsAllosomes | Man page Source code |
| hsAutosomes | Man page Source code |
| hsLinear | Man page Source code |
| hsToplevel | Man page Source code |
| identifySignatures | Man page Source code |
| identifySignaturesVRanges | Source code |
| k3we | Man page |
| k3wg | Man page |
| kmeansDecomposition | Source code |
| kmeansSignatures | Source code |
| kmerFrequency | Man page Source code |
| kmers | Man page |
| kmers-data | Man page |
| meltSignatures | Source code |
| motifMatrix | Man page Source code |
| mutationContext | Man page Source code |
| mutationContextMutect | Man page Source code |
| mutationDistance | Man page Source code |
| mutational-normalization | Man page |
| mutational-plots | Man page |
| mutational-signatures | Man page |
| ncbi | Man page Source code |
| nmfDecomposition | Man page Source code |
| nmfSignatures | Man page Source code |
| normalizeMotifs | Man page Source code |
| observed | Man page |
| observed,MutationalSignatures-method | Man page |
| pcaDecomposition | Man page Source code |
| pcaSignatures | Man page Source code |
| plotFittedSpectrum | Man page Source code |
| plotMutationSpectrum | Man page Source code |
| plotNumberSignatures | Man page Source code |
| plotObservedSpectrum | Man page Source code |
| plotRainfall | Man page Source code |
| plotSampleMap | Man page Source code |
| plotSamples | Man page Source code |
| plotSignatureMap | Man page Source code |
| plotSignatures | Man page Source code |
| plotSpectrum | Source code |
| plotVariantAbundance | Man page Source code |
| readMutect | Man page Source code |
| retreiveSignatures | Source code |
| samples | Man page |
| samples,MutationalSignatures-method | Man page |
| sca-data | Man page |
| sca_mm | Man page |
| sca_motifs_tiny | Man page |
| sca_sigs | Man page |
| seqchar | Man page Source code |
| show | Man page |
| show,MutationalSignatures-method | Man page |
| showSome | Source code |
| signatureLabels | Source code |
| signatures | Man page |
| signatures,MutationalSignatures-method | Man page |
| signatures21 | Man page |
| signatures21-data | Man page |
| sigs_nmf | Man page |
| sigs_pca | Man page |
| theme_small_axis | Source code |
| theme_ss | Source code |
| ucsc | Man page Source code |
| variants-utils | Man page |
